1RJ5 Lyase date Nov 18, 2003
title Crystal Structure Of The Extracellular Domain Of Murine Carb Anhydrase Xiv
authors D.A.Whittington, J.H.Grubb, A.Waheed, G.N.Shah, W.S.Sly, D.W.Chri
compound source
Molecule: Carbonic Anhydrase Xiv
Chain: A, B
Fragment: Extracellular Domain
Synonym: Carbonate Dehydratase Xiv, Ca-Xiv
Ec: 4.2.1.1
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Ca14, Car14, Catm
Expression_system: Chlorocebus Aethiops
Expression_system_common: African Green Monkey
Expression_system_taxid: 9534
Expression_system_cell_line: Cos-7
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcxn
symmetry Space Group: P 1 21 1
R_factor 0.234 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.000 75.600 73.200 90.00 98.90 90.00
method X-Ray Diffractionresolution 2.81 Å
ligand ACY, BMA, CL, NAG, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
related structures by homologous chain: 1RJ6
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceExpression, assay, and structure of the extracellular domain of murine carbonic anhydrase XIV: implications for selective inhibition of membrane-associated isozymes., Whittington DA, Grubb JH, Waheed A, Shah GN, Sly WS, Christianson DW, J Biol Chem. 2004 Feb 20;279(8):7223-8. Epub 2003 Dec 3. PMID:14660577
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (1rj5.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (1rj5.pdb2.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 1RJ5
  • CSU: Contacts of Structural Units for 1RJ5
  • Likely Quarternary Molecular Structure file(s) for 1RJ5
  • Structure Factors (112 Kb)
  • Retrieve 1RJ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RJ5 from S2C, [Save to disk]
  • Re-refined 1rj5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1RJ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RJ5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RJ5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rj5a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1rj5b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rj5_A] [1rj5_B] [1rj5]
  • SWISS-PROT database: [Q9WVT6]
  • Domain organization of [CAH14_MOUSE] by SWISSPFAM
  • Domain found in 1RJ5: [Carb_anhydrase ] by SMART
  • Other resources with information on 1RJ5
  • Community annotation for 1RJ5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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