1RJT Cytokine date Nov 20, 2003
title Nmr Structure Of Cxc Chemokine Cxcl11itac
authors V.Booth, I.Clark-Lewis, B.D.Sykes
compound source
Molecule: Small Inducible Cytokine B11
Chain: A
Synonym: Cxcl11, Interferon-Inducible T-Cell Alpha Chemoattractant, I-Tac, Interferon-Gamma-Inducible Protein- 9, Ip-9, H174, Beta-R1;
Engineered: Yes
Synthetic: Yes
Other_details: Synthesized With N15 Isotope Labels On All Leucine And Valine Residues. Sequence Is Naturally Found In Homo Sapiens (Human).
methodSolution NMR
note 1RJT is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structure of CXCR3 binding chemokine CXCL11 (ITAC)., Booth V, Clark-Lewis I, Sykes BD, Protein Sci 2004 Aug;13(8):2022-8. PMID:15273303
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (205 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1RJT
  • Original NMR restraints for 1RJT from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1RJT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RJT from S2C, [Save to disk]
  • View 1RJT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RJT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1RJT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rjta_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1rjt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rjt_A] [1rjt]
  • SWISS-PROT database: [O14625]
  • Domain organization of [CXL11_HUMAN] by SWISSPFAM
  • Domain found in 1RJT: [SCY ] by SMART
  • Other resources with information on 1RJT
  • Community annotation for 1RJT at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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