1RJV Metal Binding Protein date Nov 20, 2003
title Solution Structure Of Human Alpha-Parvalbumin Refined With A Paramagnetism-Based Strategy
authors I.Baig, I.Bertini, C.Del Bianco, Y.K.Gupta, Y.M.Lee, C.Luchinat, A.Quattrone, Structural Proteomics In Europe (Spine)
compound source
Molecule: Parvalbumin Alpha
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pvalb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe-30 Xa
methodSolution NMR
ligand CA enzyme
related structures by homologous chain: 1RK9, 2PAS
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceParamagnetism-based refinement strategy for the solution structure of human alpha-parvalbumin., Baig I, Bertini I, Del Bianco C, Gupta YK, Lee YM, Luchinat C, Quattrone A, Biochemistry 2004 May 11;43(18):5562-73. PMID:15122922
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (602 Kb) [Save to disk]
  • Biological Unit Coordinates (1rjv.pdb1.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 1RJV
  • CSU: Contacts of Structural Units for 1RJV
  • Original NMR restraints for 1RJV from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1RJV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RJV from S2C, [Save to disk]
  • View 1RJV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RJV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RJV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rjva_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rjv_A] [1rjv]
  • SWISS-PROT database: [P20472]
  • Domain organization of [PRVA_HUMAN] by SWISSPFAM
  • Domain found in 1RJV: [EFh ] by SMART
  • Other resources with information on 1RJV
  • Community annotation for 1RJV at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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