1RKB Transferase date Nov 21, 2003
title The Structure Of Adrenal Gland Protein Ad-004
authors H.Ren, Y.Liang, M.Bennett, X.D.Su
compound source
Molecule: Protein Ad-004
Chain: A
Synonym: Protein Cgi-137
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Adrenal Gland
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21-(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21g-Dest
symmetry Space Group: P 61
R_factor 0.203 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.555 99.555 57.191 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand LI, SO4 enzyme
related structures by homologous chain: 1FZQ
Gene
Ontology
ChainFunctionProcessComponent
A
  • adenylate kinase activity
  • nucleoside phosphate kinase ...


  • Primary referenceThe crystal structure of human adenylate kinase 6: An adenylate kinase localized to the cell nucleus., Ren H, Wang L, Bennett M, Liang Y, Zheng X, Lu F, Li L, Nan J, Luo M, Eriksson S, Zhang C, Su XD, Proc Natl Acad Sci U S A 2005 Jan 11;102(2):303-8. Epub 2005 Jan 03. PMID:15630091
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (1rkb.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 1RKB
  • CSU: Contacts of Structural Units for 1RKB
  • Likely Quarternary Molecular Structure file(s) for 1RKB
  • Structure Factors (176 Kb)
  • Retrieve 1RKB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RKB from S2C, [Save to disk]
  • Re-refined 1rkb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RKB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RKB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rkba_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rkb] [1rkb_A]
  • SWISS-PROT database: [Q9Y3D8]
  • Domain organization of [KAD6_HUMAN] by SWISSPFAM
  • Other resources with information on 1RKB
  • Community annotation for 1RKB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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