1RMV Virus Rna date Feb 11, 1997
title Ribgrass Mosaic Virus, Fiber Diffraction
authors H.Wang, G.Stubbs
compound source
Molecule: Ribgrass Mosaic Virus Rna
Chain: B
Fragment: Gaa
Organism_scientific: Ribgrass Mosaic Virus
Organism_taxid: 51680

Molecule: Ribgrass Mosaic Virus Coat Protein
Chain: A

Organism_scientific: Ribgrass Mosaic Virus
Organism_taxid: 51680
symmetry Space Group: P 1
R_factor 0.095 R_Free NULL
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Fiber Diffractionresolution 2.90 Å
ligand ACE enzyme
note 1RMV is a representative structure

Primary referenceMolecular dynamics in refinement against fiber diffraction data., Wang H, Stubbs G, Acta Crystallogr A 1993 May 1;49(3):504-13. PMID:8129880
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (1rmv.pdb1.gz) 1287 Kb
  • LPC: Ligand-Protein Contacts for 1RMV
  • CSU: Contacts of Structural Units for 1RMV
  • Likely Quarternary Molecular Structure file(s) for 1RMV
  • Retrieve 1RMV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RMV from S2C, [Save to disk]
  • View 1RMV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RMV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1RMV, from MSDmotif at EBI
  • Genome occurence of 1RMV's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rmva_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1rmv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rmv_B] [1rmv] [1rmv_A]
  • SWISS-PROT database: [P03580]
  • Domain organization of [COAT_RMVHR] by SWISSPFAM
  • Other resources with information on 1RMV
  • Community annotation for 1RMV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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