1ROD Chemokine date Nov 24, 1995
title Chimeric Protein Of Interleukin 8 And Human Melanoma Growth Stimulating Activity Protein, Nmr
authors P.Roesch, H.Sticht, M.Auer, B.Schmitt, J.Besemer, M.Horcher, T.Kirsch, I.J.D.Lindley
compound source
Molecule: Chimeric Protein Of Interleukin 8 And Human Melanoma Growth Stimulating Activity Protein;
Chain: A, B
Fragment: Interleukin 8 Residues 1 - 53, Human Melanoma Growth Stimulating Activity Protein Residues 54 - 72;
Synonym: Chi1, Cil-8m, Nap-1m12
Engineered: Yes
Other_details: Dimeric Protein
Fragment: Residues 54 - 72
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Potential
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
related structures by homologous chain: 1IKL, 1QE6
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure and activity of a chimeric interleukin-8-melanoma-growth-stimulatory-activity protein., Sticht H, Auer M, Schmitt B, Besemer J, Horcher M, Kirsch T, Lindley IJ, Rosch P, Eur J Biochem 1996 Jan 15;235(1-2):26-35. PMID:8631339
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (318 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1ROD
  • Retrieve 1ROD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ROD from S2C, [Save to disk]
  • View 1ROD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ROD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ROD, from MSDmotif at EBI
  • Genome occurence of 1ROD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1roda_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1rodb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1rod from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rod_A] [1rod] [1rod_B]
  • SWISS-PROT database: [P09341] [P10145]
  • Domain organization of [GROA_HUMAN] [IL8_HUMAN] by SWISSPFAM
  • Domain found in 1ROD: [SCY ] by SMART
  • Alignments of the sequence of 1ROD with the sequences similar proteins can be viewed for 1ROD's classification [GROA_HUMAN] [IL8_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [GROA_HUMAN] [IL8_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1ROD
  • Community annotation for 1ROD at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1ROD from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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