1ROZ Transferase date Dec 02, 2003
title Deoxyhypusine Synthase Holoenzyme In Its Low Ionic Strength, Crystal Form
authors T.C.Umland, E.C.Wolff, M.H.Park, D.R.Davies
compound source
Molecule: Deoxyhypusine Synthase
Chain: A, B
Synonym: Dhs
Ec: 2.5.1.46
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dhps, Ds
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-11a
symmetry Space Group: P 32 2 1
R_factor 0.178 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.780 104.780 159.670 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.21 Å
ligand NAD enzyme Transferase E.C.2.5.1.46 BRENDA
related structures by homologous chain: 1DHS, 1RQD
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA new crystal structure of deoxyhypusine synthase reveals the configuration of the active enzyme and of an enzyme.NAD.inhibitor ternary complex., Umland TC, Wolff EC, Park MH, Davies DR, J Biol Chem. 2004 Jul 2;279(27):28697-705. Epub 2004 Apr 20. PMID:15100216
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (1roz.pdb1.gz) 222 Kb
  • LPC: Ligand-Protein Contacts for 1ROZ
  • CSU: Contacts of Structural Units for 1ROZ
  • Likely Quarternary Molecular Structure file(s) for 1ROZ
  • Structure Factors (710 Kb)
  • Retrieve 1ROZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ROZ from S2C, [Save to disk]
  • Re-refined 1roz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ROZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ROZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ROZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1roza_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1rozb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1roz] [1roz_B] [1roz_A]
  • SWISS-PROT database: [P49366]
  • Domain organization of [DHYS_HUMAN] by SWISSPFAM
  • Other resources with information on 1ROZ
  • Community annotation for 1ROZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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