1RPO Transcription Regulation date Aug 25, 1994
title Restored Heptad Pattern Continuity Does Not Alter The Foldin Alpha-Helical Bundle
authors M.Vlassi, M.Kokkinidis
compound source
Molecule: Rop Protein
Chain: A
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.189 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.960 37.940 31.840 90.00 101.04 90.00
method X-Ray Diffractionresolution 1.40 Å
related structures by homologous chain: 1NKD, 1ROP
Primary referenceRestored heptad pattern continuity does not alter the folding of a four-alpha-helix bundle., Vlassi M, Steif C, Weber P, Tsernoglou D, Wilson KS, Hinz HJ, Kokkinidis M, Nat Struct Biol 1994 Oct;1(10):706-16. PMID:7634075
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk]
  • Biological Unit Coordinates (1rpo.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 1RPO
  • Likely Quarternary Molecular Structure file(s) for 1RPO
  • Retrieve 1RPO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RPO from S2C, [Save to disk]
    • View 1RPO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1RPO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1RPO from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RPO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rpo__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rpo] [1rpo_A]
  • SWISS-PROT database: [P03051]
  • Domain organization of [ROP_ECOLX] by SWISSPFAM
    • Other resources with information on 1RPO
  • Community annotation for 1RPO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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