1RPY Signaling Protein date Dec 03, 2003
title Crystal Structure Of The Dimeric Sh2 Domain Of Aps
authors J.Hu, J.Liu, R.Ghirlando, A.R.Saltiel, S.R.Hubbard
compound source
Molecule: Adaptor Protein Aps
Chain: A, B
Fragment: Sh2 Domain
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.228 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.378 78.378 67.330 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand MSE, SO4 enzyme
related structures by homologous chain: 1RQQ
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for recruitment of the adaptor protein APS to the activated insulin receptor., Hu J, Liu J, Ghirlando R, Saltiel AR, Hubbard SR, Mol Cell 2003 Dec;12(6):1379-89. PMID:14690593
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (1rpy.pdb1.gz) 29 Kb
  • Biological Unit Coordinates (1rpy.pdb2.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 1RPY
  • CSU: Contacts of Structural Units for 1RPY
  • Likely Quarternary Molecular Structure file(s) for 1RPY
  • Structure Factors (145 Kb)
  • Retrieve 1RPY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RPY from S2C, [Save to disk]
  • Re-refined 1rpy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1RPY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RPY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1RPY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rpya_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1rpyb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1rpy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rpy_A] [1rpy] [1rpy_B]
  • SWISS-PROT database: [Q9Z200]
  • Domain organization of [SH2B2_RAT] by SWISSPFAM
  • Domain found in 1RPY: [SH2 ] by SMART
  • Other resources with information on 1RPY
  • Community annotation for 1RPY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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