1RRQ	Hydrolase Dna	date	Dec 08, 2003
title	Muty Adenine Glycosylase In Complex With Dna Containing An A
authors	J.C.Fromme, A.Banerjee, S.J.Huang, G.L.Verdine
compound		source
Molecule: 5'-D(Apapgpapcp(8og)Ptpgpgpapc)-3' Chain: B Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Tpgptpcpcpapapgptpcpt)-3' Chain: C Engineered: Yes		Synthetic: Yes
Molecule: Muty Chain: A Ec: 3.2.2.- Engineered: Yes Mutation: Yes		Organism_scientific: Geobacillus Stearothermophilus Organism_taxid: 1422 Gene: Muty Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28
symmetry	Space Group: P 21 21 21	R_factor 0.226 R_Free 0.262
crystal cell	length a length b length c angle alpha angle beta angle gamma 37.763 85.699 142.088 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.22 Å
ligand	8OG, CA, SF4	enzyme	Hydrolase E.C.3.2.2 BRENDA
related structures	by homologous chain: 1RRS
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for removal of adenine mispaired with 8-oxoguanine by MutY adenine DNA glycosylase., Fromme JC, Banerjee A, Huang SJ, Verdine GL, Nature 2004 Feb 12;427(6975):652-6. PMID:14961129

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk] Biological Unit Coordinates (1rrq.pdb1.gz) 62 Kb LPC: Ligand-Protein Contacts for 1RRQ CSU: Contacts of Structural Units for 1RRQ Likely Quarternary Molecular Structure file(s) for 1RRQ Structure Factors (178 Kb) Retrieve 1RRQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1RRQ from S2C, [Save to disk] Re-refined 1rrq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1RRQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1RRQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1RRQ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1rrqa2, region A:234-360 [Jmol] [rasmolscript] [script source]     - Domain d1rrqa1, region A:9-229 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1rrq_B] [1rrq] [1rrq_C] [1rrq_A] SWISS-PROT database: [P83847] Domain organization of [P83847_BACST] by SWISSPFAM Domains found in 1RRQ: [ENDO3c] [FES ] by SMART

Other resources with information on 1RRQ

Community annotation for 1RRQ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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