1RT3 Nucleotidyltransferase date Jun 29, 1998
title Azt Drug Resistant Hiv-1 Reverse Transcriptase Complexed Wit
authors J.Ren, D.K.Stammers, D.I.Stuart
compound source
Molecule: Hiv-1 Reverse Transcriptase
Chain: A
Ec: 2.7.7.49
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Variant: Hxb2 Isolate
Cell_line: 293
Gene: Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: 293

Molecule: Hiv-1 Reverse Transcriptase
Chain: B
Ec: 2.7.7.49
Engineered: Yes
Mutation: Yes

Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Variant: Hxb2 Isolate
Cell_line: 293
Gene: Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: 293
symmetry Space Group: P 21 21 21
R_factor 0.264 R_Free 0.335
crystal
cell
length a length b length c angle alpha angle beta angle gamma
138.900 114.400 65.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand CSD, U05 BindingDB enzyme Transferase E.C.2.7.7.49 BRENDA
related structures by homologous chain: 1HYS, 1SUQ
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary reference3'-Azido-3'-deoxythymidine drug resistance mutations in HIV-1 reverse transcriptase can induce long range conformational changes., Ren J, Esnouf RM, Hopkins AL, Jones EY, Kirby I, Keeling J, Ross CK, Larder BA, Stuart DI, Stammers DK, Proc Natl Acad Sci U S A 1998 Aug 4;95(16):9518-23. PMID:9689112
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (1rt3.pdb1.gz) 154 Kb
  • LPC: Ligand-Protein Contacts for 1RT3
  • CSU: Contacts of Structural Units for 1RT3
  • Likely Quarternary Molecular Structure file(s) for 1RT3
  • Structure Factors (184 Kb)
  • Retrieve 1RT3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RT3 from S2C, [Save to disk]
  • Re-refined 1rt3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1RT3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RT3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RT3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rt3a2, region A:2-429 [Jmol] [rasmolscript] [script source]
        - Domain d1rt3a1, region A:430-537 [Jmol] [rasmolscript] [script source]
        - Domain d1rt3b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rt3_A] [1rt3] [1rt3_B]
  • SWISS-PROT database: [P04585]
  • Domain organization of [POL_HV1H2] by SWISSPFAM
  • Other resources with information on 1RT3
  • Community annotation for 1RT3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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