1RT9 Structure of human purine nucleoside phosphorylase in complex with Immucillin-H and sulfate date
authors Shi, W., Lewandowicz, A., Tyler, P.C., Furneaux, R.H., Almo, S.C., Schramm, V.L.
compound source
symmetry
R_factor
R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand IMH, SO4 BindingDB enzyme
related structures by homologous chain: 1A9P, 1M73
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (1rt9.pdb1.gz) 135 Kb
  • LPC: Ligand-Protein Contacts for 1RT9
  • CSU: Contacts of Structural Units for 1RT9
  • Likely Quarternary Molecular Structure file(s) for 1RT9
  • Structure Factors (182 Kb)
  • Retrieve 1RT9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RT9 from S2C, [Save to disk]
  • Re-refined 1rt9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1RT9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1RT9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RT9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rt9] [1rt9_A]
  • SWISS-PROT database: [P00491]
  • Domain organization of [PNPH_HUMAN] by SWISSPFAM
    • Other resources with information on 1RT9
  • Community annotation for 1RT9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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