1RTG Metalloprotease date Dec 21, 1995
title C-Terminal Domain (Haemopexin-Like Domain) Of Human Matrix Metalloproteinase-2
authors U.Gohlke, W.Bode
compound source
Molecule: Human Gelatinase A
Chain: A
Fragment: C-Terminal Residues 451 - 660, Haemopexin-Like Domain;
Synonym: Human Matrix Metalloproteinase-2, Mmp-2
Ec: 3.4.24.24
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.179 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.780 58.850 93.140 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand CA, CL enzyme Hydrolase E.C.3.4.24.24 BRENDA
related structures by homologous chain: 1GEN
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe C-terminal (haemopexin-like) domain structure of human gelatinase A (MMP2): structural implications for its function., Gohlke U, Gomis-Ruth FX, Crabbe T, Murphy G, Docherty AJ, Bode W, FEBS Lett 1996 Jan 8;378(2):126-30. PMID:8549817
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (1rtg.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 1RTG
  • CSU: Contacts of Structural Units for 1RTG
  • Likely Quarternary Molecular Structure file(s) for 1RTG
  • Retrieve 1RTG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RTG from S2C, [Save to disk]
    • View 1RTG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1RTG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RTG, from MSDmotif at EBI
  • Genome occurence of 1RTG's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rtg__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rtg] [1rtg_A]
  • SWISS-PROT database: [P08253]
  • Domain organization of [MMP2_HUMAN] by SWISSPFAM
  • Domain found in 1RTG: [HX ] by SMART
    • Other resources with information on 1RTG
  • Community annotation for 1RTG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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