1RUV Endoribonuclease date Jul 27, 1995
title Ribonuclease A-Uridine Vanadate Complex: High Resolution Resolution X-Ray Structure (1.3 A)
authors J.E.Ladner, B.Wladkowski, L.A.Svensson, L.Sjolin, G.L.Gilliland
compound source
Molecule: Ribonuclease A
Chain: A
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Pancreas
symmetry Space Group: P 1 21 1
R_factor 0.197 R_Free NULL
length a length b length c angle alpha angle beta angle gamma
29.800 38.200 53.200 90.00 106.10 90.00
method X-Ray Diffractionresolution 1.25 Å
ligand TBU, UVC enzyme Hydrolase E.C. BRENDA
related structures by homologous chain: 1EIC, 7RSA
  • ribonuclease A activity

  • Primary referenceX-ray structure of a ribonuclease A-uridine vanadate complex at 1.3 A resolution., Ladner JE, Wladkowski BD, Svensson LA, Sjolin L, Gilliland GL, Acta Crystallogr D Biol Crystallogr. 1997 May 1;53(Pt 3):290-301. PMID:15299932
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (1ruv.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 1RUV
  • CSU: Contacts of Structural Units for 1RUV
  • Likely Quarternary Molecular Structure file(s) for 1RUV
  • Retrieve 1RUV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RUV from S2C, [Save to disk]
  • View 1RUV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RUV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1RUV from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1RUV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ruv__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1ruv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ruv_A] [1ruv]
  • SWISS-PROT database: [P61823]
  • Domain organization of [RNAS1_BOVIN] by SWISSPFAM
  • Domain found in 1RUV: [RNAse_Pc ] by SMART
  • Other resources with information on 1RUV
  • Community annotation for 1RUV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1RUV from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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