1RV1	Ligase	date	Dec 12, 2003
title	Crystal Structure Of Human Mdm2 With An Imidazoline Inhibito
authors	C.Lukacs, U.Kammlott, B.Graves
compound		source
Molecule: Ubiquitin-Protein Ligase E3 Mdm2 Chain: A, B, C Fragment: Residues 25-109 Synonym: P53-Binding Protein Mdm2, Oncoprotein Mdm2, Double Protein, Hdm2; Ec: 6.3.2.- Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mdm2 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pqe40
symmetry	Space Group: C 1 2 1	R_factor 0.256 R_Free 0.322
crystal cell	length a length b length c angle alpha angle beta angle gamma 122.264 39.727 79.362 90.00 114.29 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	IMZ BindingDB	enzyme	Ligase E.C.6.3.2 BRENDA
related structures	by homologous chain: 1YCQ, 1YCR
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	In vivo activation of the p53 pathway by small-molecule antagonists of MDM2., Vassilev LT, Vu BT, Graves B, Carvajal D, Podlaski F, Filipovic Z, Kong N, Kammlott U, Lukacs C, Klein C, Fotouhi N, Liu EA, Science 2004 Feb 6;303(5659):844-8. Epub 2004 Jan 2. PMID:14704432

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk] Biological Unit Coordinates (1rv1.pdb1.gz) 46 Kb LPC: Ligand-Protein Contacts for 1RV1 CSU: Contacts of Structural Units for 1RV1 Likely Quarternary Molecular Structure file(s) for 1RV1 Retrieve 1RV1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1RV1 from S2C, [Save to disk]

View 1RV1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1RV1

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1RV1, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1rv1a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1rv1b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1rv1c_, region C [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1rv1_B] [1rv1_C] [1rv1] [1rv1_A] SWISS-PROT database: [Q00987] Domain organization of [MDM2_HUMAN] by SWISSPFAM

Other resources with information on 1RV1

Community annotation for 1RV1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---