1RV5 Hydrolase Dna date Jun 01, 1998
title Complex Of Ecorv Endonuclease With D(Aaagat)D(Atctt)
authors N.C.Horton, J.J.Perona
compound source
Molecule: 5'-D(Apapapgpaptaptpcptpt)-3'
Chain: C, D
Synonym: Cognate Sequence
Engineered: Yes
Synthetic: Yes

Molecule: Ecorv Endonuclease
Chain: A, B
Ec: 3.1.21.4

Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 1
R_factor 0.193 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.600 50.400 63.900 96.40 109.20 108.50
method X-Ray Diffractionresolution 2.10 Å
ligand
enzyme Hydrolase E.C.3.1.21.4 BRENDA
related structures by homologous chain: 1RVB, 1STX
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • nuclease activity
  • endonuclease activity


  • Primary referenceRole of protein-induced bending in the specificity of DNA recognition: crystal structure of EcoRV endonuclease complexed with d(AAAGAT) + d(ATCTT)., Horton NC, Perona JJ, J Mol Biol 1998 Apr 10;277(4):779-87. PMID:9545372
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (1rv5.pdb1.gz) 110 Kb
  • CSU: Contacts of Structural Units for 1RV5
  • Likely Quarternary Molecular Structure file(s) for 1RV5
  • Retrieve 1RV5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RV5 from S2C, [Save to disk]
  • View 1RV5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RV5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1RV5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rv5a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1rv5b_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1rv5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rv5_A] [1rv5_C] [1rv5_B] [1rv5] [1rv5_D]
  • SWISS-PROT database: [P04390]
  • Domain organization of [T2E5_ECOLX] by SWISSPFAM
  • Other resources with information on 1RV5
  • Community annotation for 1RV5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science