1RW2 Dna Binding Protein date Dec 15, 2003
title Three-Dimensional Structure Of Ku80 Ctd
authors Z.Zhang, W.Hu, L.Cano, T.D.Lee, D.J.Chen, Y.Chen
compound source
Molecule: Atp-Dependent Dna Helicase II, 80 Kda Subunit
Chain: A
Fragment: Ku80 C-Terminal Domain
Synonym: Lupus Ku Autoantigen Protein P86, Ku86, Ku80, 86 Kda Subunit Of Ku Antigen, Thyroid- Lupus Autoantigen, Tlaa, Ctc Box Binding Factor 85 Kda Subunit, Ctcbf, Ctc85, Nuclear Factor Iv, Dna-Repair Protein Xrcc5;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ku80 (566-710)
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
methodSolution NMR
related structures by homologous chain: 1Q2Z
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the C-terminal domain of Ku80 suggests important sites for protein-protein interactions., Zhang Z, Hu W, Cano L, Lee TD, Chen DJ, Chen Y, Structure (Camb) 2004 Mar;12(3):495-502. PMID:15016365
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (462 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1RW2
  • Original NMR restraints for 1RW2 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1RW2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RW2 from S2C, [Save to disk]
  • View 1RW2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RW2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1RW2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rw2a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1rw2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rw2] [1rw2_A]
  • SWISS-PROT database: [P13010]
  • Domain organization of [KU86_HUMAN] by SWISSPFAM
  • Other resources with information on 1RW2
  • Community annotation for 1RW2 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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