1RY7 Growth Factor Growth Factor Receptor date Dec 19, 2003
title Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1
authors S.K.Olsen, O.A.Ibrahimi, A.Raucci, F.Zhang, A.V.Eliseenkova, A.Yayon, C.Basilico, R.J.Linhardt, J.Schlessinger, M.Mohammadi
compound source
Molecule: Heparin-Binding Growth Factor 1
Chain: A
Fragment: Fgf1
Synonym: Hbgf-1; Acidic Fibroblast Growth Factor; Afgf Beta-Endothelial Cell Growth Factor; Ecgf-Beta;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgf1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fibroblast Growth Factor Receptor 3
Chain: B
Fragment: Fgfr-3c
Synonym: Fgfr-3; Tyrosine Kinase Jtk4
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgfr3c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.277 R_Free 0.341
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.223 64.748 99.932 90.00 94.67 90.00
method X-Ray Diffractionresolution 3.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceInsights into the molecular basis for fibroblast growth factor receptor autoinhibition and ligand-binding promiscuity., Olsen SK, Ibrahimi OA, Raucci A, Zhang F, Eliseenkova AV, Yayon A, Basilico C, Linhardt RJ, Schlessinger J, Mohammadi M, Proc Natl Acad Sci U S A 2004 Jan 27;101(4):935-40. Epub 2004 Jan 19. PMID:14732692
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (1ry7.pdb1.gz) 57 Kb
  • CSU: Contacts of Structural Units for 1RY7
  • Likely Quarternary Molecular Structure file(s) for 1RY7
  • Structure Factors (89 Kb)
  • Retrieve 1RY7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RY7 from S2C, [Save to disk]
  • Re-refined 1ry7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1RY7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RY7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1RY7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ry7a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ry7b1, region B:150-248 [Jmol] [rasmolscript] [script source]
        - Domain d1ry7b2, region B:249-362 [Jmol] [rasmolscript] [script source]
  • Fold representative 1ry7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ry7_B] [1ry7_A] [1ry7]
  • SWISS-PROT database: [P05230] [P22607]
  • Domain organization of [FGF1_HUMAN] [FGFR3_HUMAN] by SWISSPFAM
  • Domains found in 1RY7: [FGF] [IG_like] [IGc2 ] by SMART
  • Alignments of the sequence of 1RY7 with the sequences similar proteins can be viewed for 1RY7's classification [FGF1_HUMAN] [FGFR3_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FGF1_HUMAN] [FGFR3_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1RY7
  • Community annotation for 1RY7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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