1RYU Dna Binding Protein date Dec 22, 2003
title Solution Structure Of The Swi1 Arid
authors S.Kim, Z.Zhang, S.Upchurch, N.Isern, Y.Chen
compound source
Molecule: Swisnf-Related, Matrix-Associated, Actin- Dependent Regulator Of Chromatin Subfamily F Member 1;
Chain: A
Fragment: Swi1 Arid (Residues 617-736)
Synonym: Swi-Snf Complex Protein P270, B120
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
methodSolution NMR

Primary referenceStructure and DNA-binding sites of the SWI1 AT-rich interaction domain (ARID) suggest determinants for sequence-specific DNA recognition., Kim S, Zhang Z, Upchurch S, Isern N, Chen Y, J Biol Chem 2004 Apr 16;279(16):16670-6. Epub 2004 Jan 13. PMID:14722072
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (291 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1RYU
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1RYU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RYU from S2C, [Save to disk]
  • View 1RYU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RYU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1RYU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ryua_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1ryu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ryu] [1ryu_A]
  • SWISS-PROT database: [O14497]
  • Domain organization of [ARI1A_HUMAN] by SWISSPFAM
  • Domains found in 1RYU: [ARID] [BRIGHT ] by SMART
  • Other resources with information on 1RYU
  • Community annotation for 1RYU at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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