1S0L Immune Response date Dec 31, 2003
title Interleukin 1 Beta Mutant F42w
authors D.H.Adamek, L.Guerrero, D.L.D.Caspar
compound source
Molecule: Interleukin-1 Beta
Chain: A
Fragment: Interleukin 1-B
Synonym: Il-1 Beta, Catabolin
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il1b
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl-21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet 21a(+)
symmetry Space Group: P 43
R_factor 0.191 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.900 54.900 77.240 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.34 Å
related structures by homologous chain: 8I1B, 9ILB
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and energetic consequences of mutations in a solvated hydrophobic cavity., Adamek DH, Guerrero L, Blaber M, Caspar DL, J Mol Biol 2005 Feb 11;346(1):307-18. Epub 2004 Dec 24. PMID:15663946
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (1s0l.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 1S0L
  • Likely Quarternary Molecular Structure file(s) for 1S0L
  • Structure Factors (73 Kb)
  • Retrieve 1S0L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S0L from S2C, [Save to disk]
  • Re-refined 1s0l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1S0L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1S0L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1S0L, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1s0la_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1s0l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s0l] [1s0l_A]
  • SWISS-PROT database: [P01584]
  • Domain organization of [IL1B_HUMAN] by SWISSPFAM
  • Domain found in 1S0L: [IL1 ] by SMART
  • Other resources with information on 1S0L
  • Community annotation for 1S0L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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