1S11 Membrane Protein date Jan 05, 2004
title Theoretical Model Of Glutamate Binding Site Of Nmda Receptor In Closed Form
authors I.G.Tikhonova, I.I.Baskin, V.A.Palyulin, N.S.Zefirov, S.O.Bachurin
compound source
Molecule: Glutamate [Nmda] Receptor Subunit Epsilon 2
Chain: A
Fragment: Glutamate Binding Site
Synonym: N-Methyl D-Aspartate Receptor Subtype 2b, Nr2b, Nmdar2b, N-Methyl-D-Aspartate Receptor Subunit 3;
Organism_scientific: Homo Sapiens
Organism_common: Human

Molecule: Glutamate [Nmda] Receptor Subunit Epsilon 2
Chain: B
Fragment: Glutamate Binding Site
Synonym: N-Methyl D-Aspartate Receptor Subtype 2b, Nr2b, Nmdar2b, N-Methyl-D-Aspartate Receptor Subunit 3

Organism_scientific: Homo Sapiens
Organism_common: Human
methodTheoretical Model
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1S11
  • View 1S11 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1S11
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 1s11 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • SWISS-PROT database: [Q13224]
  • Domain organization of [NMDE2_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1S11 with the sequences similar proteins can be viewed for 1S11's classification [NMDE2_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [NMDE2_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1S11
  • Community annotation for 1S11 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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