1S1N Cell Adhesion date Jan 07, 2004
title Sh3 Domain Of Human Nephrocystin
authors A.Le Maire, T.Weber, S.Saunier, C.Antignac, A.Ducruix, F.Dardel
compound source
Molecule: Nephrocystin 1
Chain: A
Fragment: Sh3 Domain
Synonym: Juvenile Nephronophthisis 1 Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nphp1, Nph1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-2
methodSolution NMR
Primary referenceSolution NMR structure of the SH3 domain of human nephrocystin and analysis of a mutation-causing juvenile nephronophthisis., le Maire A, Weber T, Saunier S, Broutin I, Antignac C, Ducruix A, Dardel F, Proteins 2005 May 1;59(2):347-55. PMID:15723349
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (273 Kb) [Save to disk]
  • Biological Unit Coordinates (1s1n.pdb1.gz) 17 Kb
  • CSU: Contacts of Structural Units for 1S1N
  • Original NMR restraints for 1S1N from PDB
  • Retrieve 1S1N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S1N from S2C, [Save to disk]
  • View 1S1N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1S1N
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1S1N, from MSDmotif at EBI
  • Fold representative 1s1n from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s1n] [1s1n_A]
  • SWISS-PROT database: [O15259]
  • Domain organization of [NPHP1_HUMAN] by SWISSPFAM
  • Domain found in 1S1N: [SH3 ] by SMART
  • Other resources with information on 1S1N
  • Community annotation for 1S1N at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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