1S31 Signaling Protein date Jan 12, 2004
title Crystal Structure Analysis Of The Human Tub Protein (Isoform Spanning Residues 289 Through 561
authors S.Boutboul, K.J.Carroll, A.Basdevant, C.Gomez, E.Nandrot, K.Cleme L.Shapiro, M.Abitbol
compound source
Molecule: Tubby Isoform A
Chain: A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tub
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psmt3
symmetry Space Group: I 2 3
R_factor 0.181 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
149.981 149.981 149.981 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand PGE enzyme
related structures by homologous chain: 1I7E
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (1s31.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (1s31.pdb2.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 1S31
  • CSU: Contacts of Structural Units for 1S31
  • Likely Quarternary Molecular Structure file(s) for 1S31
  • Structure Factors (125 Kb)
  • Retrieve 1S31 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S31 from S2C, [Save to disk]
  • Re-refined 1s31 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1S31 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1S31
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1S31, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s31] [1s31_A]
  • SWISS-PROT database: [P50607]
  • Domain organization of [TUB_HUMAN] by SWISSPFAM
    • Other resources with information on 1S31
  • Community annotation for 1S31 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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