1S3S	Protein Binding	date	Jan 14, 2004
title	Crystal Structure Of Aaa Atpase P97vcp Nd1 In Complex With
authors	I.Dreveny, H.Kondo, K.Uchiyama, A.Shaw, X.Zhang, P.S.Freemont
compound		source
Molecule: Transitional Endoplasmic Reticulum Atpase (Ter At Mg(2+)- Atpase P97 Subunit) (Valosin Containing Protein) (V [Contains: Valosin] Chain: A, B, C, D, E, F Fragment: Nd1 Domains (1-458) Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Vcp Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: P47 Protein Chain: G, H, I Fragment: C-Terminal Domain (244-370) Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 65	R_factor 0.248 R_Free 0.294
crystal cell	length a length b length c angle alpha angle beta angle gamma 157.719 157.719 243.195 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	ADP	enzyme
note	1S3S is a representative structure
related structures	by homologous chain: 1E32, 1I42
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Structural basis of the interaction between the AAA ATPase p97/VCP and its adaptor protein p47., Dreveny I, Kondo H, Uchiyama K, Shaw A, Zhang X, Freemont PS, EMBO J 2004 Mar 10;23(5):1030-9. Epub 2004 Feb 26. PMID:14988733

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (419 Kb) [Save to disk] Biological Unit Coordinates (1s3s.pdb1.gz) 411 Kb LPC: Ligand-Protein Contacts for 1S3S CSU: Contacts of Structural Units for 1S3S Likely Quarternary Molecular Structure file(s) for 1S3S Retrieve 1S3S in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1S3S from S2C, [Save to disk]

View 1S3S in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1S3S

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1S3S, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1s3sa3, region A:107-200 [Jmol] [rasmolscript] [script source]     - Domain d1s3sa2, region A:201-458 [Jmol] [rasmolscript] [script source]     - Domain d1s3sa1, region A:23-106 [Jmol] [rasmolscript] [script source]     - Domain d1s3sb3, region B:107-200 [Jmol] [rasmolscript] [script source]     - Domain d1s3sb2, region B:201-458 [Jmol] [rasmolscript] [script source]     - Domain d1s3sb1, region B:23-106 [Jmol] [rasmolscript] [script source]     - Domain d1s3sc3, region C:107-200 [Jmol] [rasmolscript] [script source]     - Domain d1s3sc2, region C:201-458 [Jmol] [rasmolscript] [script source]     - Domain d1s3sc1, region C:22-106 [Jmol] [rasmolscript] [script source]     - Domain d1s3sd3, region D:107-200 [Jmol] [rasmolscript] [script source]     - Domain d1s3sd2, region D:201-458 [Jmol] [rasmolscript] [script source]     - Domain d1s3sd1, region D:23-106 [Jmol] [rasmolscript] [script source]     - Domain d1s3se3, region E:107-200 [Jmol] [rasmolscript] [script source]     - Domain d1s3se2, region E:201-458 [Jmol] [rasmolscript] [script source]     - Domain d1s3se1, region E:23-106 [Jmol] [rasmolscript] [script source]     - Domain d1s3sf3, region F:107-200 [Jmol] [rasmolscript] [script source]     - Domain d1s3sf1, region F:18-106 [Jmol] [rasmolscript] [script source]     - Domain d1s3sf2, region F:201-458 [Jmol] [rasmolscript] [script source]     - Domain d1s3sg_, region G [Jmol] [rasmolscript] [script source]     - Domain d1s3sh_, region H [Jmol] [rasmolscript] [script source]     - Domain d1s3si_, region I [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1s3s_B] [1s3s_I] [1s3s_F] [1s3s_A] [1s3s_G] [1s3s_H] [1s3s_D] [1s3s] [1s3s_E] [1s3s_C] SWISS-PROT database: [O35987] [Q01853] Domain organization of [NSF1C_RAT] [TERA_MOUSE] by SWISSPFAM Domains found in 1S3S: [AAA] [CDC48_2] [CDC48_N] [UBX ] by SMART

Other resources with information on 1S3S

Community annotation for 1S3S at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---