1S5G Structure of Scallop myosin S1 reveals a novel nucleotide conformation date
authors Risal, D., Gourinath, S., Himmel, D.M., Szent-Gyorgyi, A.G., Cohen, C.
compound source
symmetry
R_factor
R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.10
ligand ADP, CA, MG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Y


Z


Primary referenceMyosin subfragment 1 structures reveal a partially bound nucleotide and a complex salt bridge that helps couple nucleotide and actin binding., Risal D, Gourinath S, Himmel DM, Szent-Gyorgyi AG, Cohen C, Proc Natl Acad Sci U S A 2004 Jun 15;101(24):8930-5. Epub 2004 Jun 7. PMID:15184651
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk]
  • Biological Unit Coordinates (1s5g.pdb1.gz) 178 Kb
  • LPC: Ligand-Protein Contacts for 1S5G
  • CSU: Contacts of Structural Units for 1S5G
  • Likely Quarternary Molecular Structure file(s) for 1S5G
  • Structure Factors (182 Kb)
  • Retrieve 1S5G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S5G from S2C, [Save to disk]
  • Re-refined 1s5g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1S5G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1S5G
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1S5G, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1s5ga1, region A:29-76 [Jmol] [rasmolscript] [script source]
        - Domain d1s5ga2, region A:3-28,A:77-836 [Jmol] [rasmolscript] [script source]
        - Domain d1s5gy_, region Y [Jmol] [rasmolscript] [script source]
        - Domain d1s5gz_, region Z [Jmol] [rasmolscript] [script source]
  • Fold representative 1s5g from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s5g] [1s5g_Z] [1s5g_A] [1s5g_Y]
  • SWISS-PROT database: [P07291] [P13543] [P24733]
  • Domain organization of [MLE_AEQIR] [MLR_AEQIR] [MYS_AEQIR] by SWISSPFAM
  • Domains found in 1S5G: [EFh] [IQ] [MYSc ] by SMART
    • Other resources with information on 1S5G
  • Community annotation for 1S5G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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