1S9K Transcription Dna date Feb 04, 2004
title Crystal Structure Of Human Nfat1 And Fos-Jun On The Il-2 Arre1 Site
authors D.Wang, J.C.Stroud, L.Chen
compound source
Molecule: Human Il-2 Arre1 Promoter Element, Plus Strand
Chain: A
Engineered: Yes
Synthetic: Yes
Other_details: Solid Phase Synthesis

Molecule: Human Il-2 Arre1 Promoter Element, Minus Strand
Chain: B
Engineered: Yes

Synthetic: Yes
Other_details: Solid Phase Synthesis

Molecule: Nuclear Factor Of Activated T-Cells, Cytoplasmic 2;
Chain: C
Synonym: T Cell Transcription Factor Nfat1, Nfat Pre- Existing Subunit, Nf-Atp;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nfatc2, Nfat1, Nfatp
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Proto-Oncogene Protein C-Fos
Chain: D
Synonym: Cellular Oncogene Fos, G0g1 Switch Regulatory Protein 7;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fos, G0s7
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Transcription Factor Ap-1
Chain: E
Synonym: Activator Protein 1, Ap1, Proto-Oncogene C-Jun, V- Jun Avian Sarcoma Virus 17 Oncogene Homolog, P39;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Jun
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.242 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.769 86.260 84.044 90.00 111.24 90.00
method X-Ray Diffractionresolution 3.10 Å
Gene
Ontology
ChainFunctionProcessComponent
C


D


E


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (1s9k.pdb1.gz) 79 Kb
  • CSU: Contacts of Structural Units for 1S9K
  • Likely Quarternary Molecular Structure file(s) for 1S9K
  • Structure Factors (253 Kb)
  • Retrieve 1S9K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S9K from S2C, [Save to disk]
  • Re-refined 1s9k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1S9K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1S9K
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1S9K, from MSDmotif at EBI
  • Fold representative 1s9k from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s9k_D] [1s9k_A] [1s9k_E] [1s9k_B] [1s9k_C] [1s9k]
  • SWISS-PROT database: [P01100] [P05412] [Q13469]
  • Domain organization of [FOS_HUMAN] [JUN_HUMAN] [NFAC2_HUMAN] by SWISSPFAM
  • Domains found in 1S9K: [BRLZ] [IPT ] by SMART
  • Other resources with information on 1S9K
  • Community annotation for 1S9K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science