1S9M Transcription Dna date May 19, 1999
title Structural Model Of The P170r Human Sox9-Dna Complex
authors S.Ranganathan, S.Mcdowall, A.Argentaro, P.Weller, S.Mertin, S.Mansour, J.Tolmie, V.Harley
compound source
Molecule: Protein (Transcription Factor Sox9)
Chain: A
Fragment: Dna-Binding Domain
Organism_scientific: Homo Sapiens
Organism_common: Human
Tissue: Testis

Molecule: Dna (5'-D(Gpcpapcpapapapc)-3')
Chain: B
Engineered: Yes

Synthetic: Yes

Molecule: Dna (5'-D(Gptptptpgptpgpc)-3')
Chain: C
Engineered: Yes

Synthetic: Yes
methodTheoretical Model
Primary referenceFunctional and structural studies of wild type SOX9 and mutations causing campomelic dysplasia., McDowall S, Argentaro A, Ranganathan S, Weller P, Mertin S, Mansour S, Tolmie J, Harley V, J Biol Chem 1999 Aug 20;274(34):24023-30. PMID:10446171
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1S9M
  • SEQRES to COORDINATES correlation for 1S9M from S2C, [Save to disk]
  • View 1S9M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1S9M
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 1s9m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • SWISS-PROT database: [P48436]
  • Domain organization of [SOX9_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1S9M with the sequences similar proteins can be viewed for 1S9M's classification [SOX9_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [SOX9_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1S9M
  • Community annotation for 1S9M at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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