1SAX Transcription Dna date Feb 09, 2004
title Three-Dimensional Structure Of S.Aureus Methicillin-Resistan Regulating Transcriptional Repressor Meci In Complex With 2 Dna
authors R.Garcia-Castellanos, G.Mallorqui-Fernandez, A.Marrero, J.Potem M.Coll, F.X.Gomis-Ruth
compound source
Molecule: 5'-D(Gctccgatattacagttgtaatttt)-3'
Chain: C
Engineered: Yes
Other_details: Meci Operator Sequence
Synthetic: Yes

Molecule: 5'-D(Caaaattacaactgtaatatcggag)-3'
Chain: D
Engineered: Yes
Other_details: Meci Operator Sequence

Synthetic: Yes

Molecule: Methicillin Resistance Regulatory Protein Meci
Chain: A, B
Synonym: Methicillin Repressor Meci; Meci
Engineered: Yes

Organism_scientific: Staphylococcus Aureus Subsp. Aureus
Organism_taxid: 158879
Strain: N315
Gene: Meci
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5alpha
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproex Hta (Invitrogen)
symmetry Space Group: P 31 2 1
R_factor 0.212 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
133.600 133.600 54.700 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand K enzyme
related structures by homologous chain: 1XSD
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceOn the transcriptional regulation of methicillin resistance: MecI repressor in complex with its operator., Garcia-Castellanos R, Mallorqui-Fernandez G, Marrero A, Potempa J, Coll M, Gomis-Ruth FX, J Biol Chem 2004 Apr 23;279(17):17888-96. Epub 2004 Feb 11. PMID:14960592
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (1sax.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 1SAX
  • CSU: Contacts of Structural Units for 1SAX
  • Likely Quarternary Molecular Structure file(s) for 1SAX
  • Retrieve 1SAX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SAX from S2C, [Save to disk]
  • View 1SAX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SAX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SAX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1saxa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1saxb_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sax] [1sax_D] [1sax_A] [1sax_C] [1sax_B]
  • SWISS-PROT database: [P68261]
  • Domain organization of [MECI_STAAN] by SWISSPFAM
  • Other resources with information on 1SAX
  • Community annotation for 1SAX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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