1SBX Oncoprotein date Feb 11, 2004
title Crystal Structure Of The Dachshund-Homology Domain Of Human Ski
authors J.J.Wilson, M.Malakhova, R.Zhang, A.Joachimiak, R.S.Hegde
compound source
Molecule: Ski Oncogene
Chain: A
Fragment: Dachshund-Homology Domain Of Human Ski
Synonym: C-Ski
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ski
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 1 21 1
R_factor 0.170 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
25.927 46.633 35.729 90.00 93.97 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand MSE enzyme
Primary referenceCrystal Structure of the Dachshund Homology Domain of Human SKI., Wilson JJ, Malakhova M, Zhang R, Joachimiak A, Hegde RS, Structure (Camb) 2004 May;12(5):785-92. PMID:15130471
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (1sbx.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 1SBX
  • CSU: Contacts of Structural Units for 1SBX
  • Likely Quarternary Molecular Structure file(s) for 1SBX
  • Structure Factors (205 Kb)
  • Retrieve 1SBX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SBX from S2C, [Save to disk]
  • Re-refined 1sbx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SBX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SBX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1SBX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sbxa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1sbx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sbx] [1sbx_A]
  • SWISS-PROT database: [P12755]
  • Domain organization of [SKI_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1SBX with the sequences similar proteins can be viewed for 1SBX's classification [SKI_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [SKI_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1SBX
  • Community annotation for 1SBX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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