1SCF Hormone Growth Factor date Jun 04, 1998
title Human Recombinant Stem Cell Factor
authors X.Jiang, O.Gurel, K.E.Langley, W.A.Hendrickson
compound source
Molecule: Stem Cell Factor
Chain: A, B, C, D
Synonym: Scf, Sl, Mgf, Mast Cell Growth Factor
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.199 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.820 82.550 88.190 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand 1PE, CA, MSE enzyme
related structures by homologous chain: 1EXZ
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of the active core of human stem cell factor and analysis of binding to its receptor kit., Jiang X, Gurel O, Mendiaz EA, Stearns GW, Clogston CL, Lu HS, Osslund TD, Syed RS, Langley KE, Hendrickson WA, EMBO J 2000 Jul 3;19(13):3192-203. PMID:10880433
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (1scf.pdb1.gz) 43 Kb
  • Biological Unit Coordinates (1scf.pdb2.gz) 38 Kb
  • Biological Unit Coordinates (1scf.pdb3.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 1SCF
  • CSU: Contacts of Structural Units for 1SCF
  • Likely Quarternary Molecular Structure file(s) for 1SCF
  • Retrieve 1SCF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SCF from S2C, [Save to disk]
  • View 1SCF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SCF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1SCF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1scfa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1scfb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1scfc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1scfd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1scf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1scf_C] [1scf] [1scf_A] [1scf_D] [1scf_B]
  • SWISS-PROT database: [P21583]
  • Domain organization of [SCF_HUMAN] by SWISSPFAM
  • Other resources with information on 1SCF
  • Community annotation for 1SCF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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