1SD6 Dna Binding Protein date Feb 13, 2004
title Crystal Structure Of Native Meci At 2.65 A
authors M.K.Safo, Q.Zhao, F.N.Musayev, H.Robinson, N.Scarsdale, G.L.Arche
compound source
Molecule: Methicillin Resistance Regulatory Protein Meci
Chain: A, B
Synonym: Meci
Engineered: Yes
Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Gene: Meci, Sa0040
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3
symmetry Space Group: P 21 21 21
R_factor 0.207 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.711 72.748 73.595 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.65 Å
related structures by homologous chain: 1OKR, 1SD7, 1XSD
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of the BlaI repressor from Staphylococcus aureus and its complex with DNA: insights into transcriptional regulation of the bla and mec operons., Safo MK, Zhao Q, Ko TP, Musayev FN, Robinson H, Scarsdale N, Wang AH, Archer GL, J Bacteriol 2005 Mar;187(5):1833-44. PMID:15716455
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (1sd6.pdb1.gz) 41 Kb
  • CSU: Contacts of Structural Units for 1SD6
  • Likely Quarternary Molecular Structure file(s) for 1SD6
  • Structure Factors (58 Kb)
  • Retrieve 1SD6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SD6 from S2C, [Save to disk]
  • Re-refined 1sd6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SD6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SD6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SD6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sd6a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1sd6b_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sd6_A] [1sd6_B] [1sd6]
  • SWISS-PROT database: [P68261]
  • Domain organization of [MECI_STAAN] by SWISSPFAM
  • Other resources with information on 1SD6
  • Community annotation for 1SD6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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