1SDI Structural Genomics, Unknown Function date Feb 13, 2004
title 1.65 A Structure Of Escherichia Coli Ycfc Gene Product
authors D.Borek, Z.Otwinowski, Y.Chen, T.Skarina, A.Savchenko, A.Edwards, Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Hypothetical Protein Ycfc
Chain: A
Synonym: Orf-23
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Ycfc, B1132
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.150 R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.527 62.649 68.816 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand ACY, MPD enzyme
note 1SDI is a representative structure
related structures by homologous chain: 1QZ4
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (1sdi.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 1SDI
  • CSU: Contacts of Structural Units for 1SDI
  • Likely Quarternary Molecular Structure file(s) for 1SDI
  • Structure Factors (444 Kb)
  • Retrieve 1SDI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SDI from S2C, [Save to disk]
  • Re-refined 1sdi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1SDI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1SDI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SDI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sdia_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sdi_A] [1sdi]
  • SWISS-PROT database: [P25746]
  • Domain organization of [HFLD_ECOLI] by SWISSPFAM
    • Other resources with information on 1SDI
  • Community annotation for 1SDI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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