1SHC Complex (Signal Transduction Peptide) date Mar 27, 1996
title Shc Ptb Domain Complexed With A Trka Receptor Phosphopeptide, Nmr, Minimized Average Structure
authors M.M.Zhou, K.S.Ravichandran, E.T.Olejniczak, A.M.Petros, R.P.Meadows, M.Sattler, J.E.Harlan, W.S.Wade, S.J.Burakoff, S.W.Fesik
compound source
Molecule: Shc
Chain: A
Fragment: Ptb Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: Bl21 (De3)
Cell_line: Bl21
Gene: Ptb Domain Of Shc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet15b
Expression_system_gene: Ptb Domain Of Shc

Molecule: Trka Receptor Phosphopeptide
Chain: B
Engineered: Yes

methodSolution NMR
ligand PTR enzyme
related structures by homologous chain: 1OY2
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and ligand recognition of the phosphotyrosine binding domain of Shc., Zhou MM, Ravichandran KS, Olejniczak EF, Petros AM, Meadows RP, Sattler M, Harlan JE, Wade WS, Burakoff SJ, Fesik SW, Nature 1995 Dec 7;378(6557):584-92. PMID:8524391
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1SHC
  • CSU: Contacts of Structural Units for 1SHC
  • Retrieve 1SHC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SHC from S2C, [Save to disk]
  • View 1SHC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SHC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1SHC, from MSDmotif at EBI
  • Genome occurence of 1SHC's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1shca_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1shc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1shc] [1shc_B] [1shc_A]
  • SWISS-PROT database: [P04629] [P29353]
  • Domain organization of [NTRK1_HUMAN] [SHC1_HUMAN] by SWISSPFAM
  • Domain found in 1SHC: [PTB ] by SMART
  • Alignments of the sequence of 1SHC with the sequences similar proteins can be viewed for 1SHC's classification [NTRK1_HUMAN] [SHC1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [NTRK1_HUMAN] [SHC1_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1SHC
  • Community annotation for 1SHC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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