1SHY Growth Factor Growth Factor Receptor date Feb 26, 2004
title The Crystal Structure Of Hgf Beta-Chain In Complex With The Domain Of The Met Receptor.
authors J.Stamos, C.Wiesmann
compound source
Molecule: Hepatocyte Growth Factor
Chain: A
Fragment: Hgf Beta Chain
Synonym: Scatter Factor, Sf, Hepatopoeitin A
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hgf, Hpta
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Hepatocyte Growth Factor Receptor
Chain: B
Fragment: Met Receptor Sema And Psi Domain
Synonym: Met Proto-Oncogene Tyrosine Kinase, C-Met, Hgf Rec Hgf-Sf Receptor;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Met
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 2
R_factor 0.209 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
137.052 186.352 66.659 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.22 Å
Primary referenceCrystal structure of the HGF beta-chain in complex with the Sema domain of the Met receptor., Stamos J, Lazarus RA, Yao X, Kirchhofer D, Wiesmann C, EMBO J 2004 Jun 16;23(12):2325-35. Epub 2004 May 27. PMID:15167892
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (1shy.pdb1.gz) 117 Kb
  • CSU: Contacts of Structural Units for 1SHY
  • Likely Quarternary Molecular Structure file(s) for 1SHY
  • Structure Factors (211 Kb)
  • Retrieve 1SHY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SHY from S2C, [Save to disk]
  • Re-refined 1shy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SHY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SHY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1SHY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1shya_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1shyb1, region B:40-515 [Jmol] [rasmolscript] [script source]
        - Domain d1shyb2, region B:516-564 [Jmol] [rasmolscript] [script source]
  • Fold representative 1shy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1shy_B] [1shy_A] [1shy]
  • SWISS-PROT database: [P14210] [P08581]
  • Domain organization of [HGF_HUMAN] [MET_HUMAN] by SWISSPFAM
  • Domains found in 1SHY: [PSI] [Sema] [Tryp_SPc ] by SMART
  • Other resources with information on 1SHY
  • Community annotation for 1SHY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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