1SID Virus date Dec 12, 1995
title Murine Polyomavirus Complexed With 3'Sialyl Lactose
authors T.Stehle, S.C.Harrison
compound source
Molecule: Polyomavirus Coat Protein Vp1
Chain: A, B, C, D, E, F
Organism_scientific: Mouse Polyomavirus (Strain P16 Small- Plaque);
Organism_taxid: 47935
Strain: Small-Plaque P16
symmetry Space Group: I 2 3
R_factor 0.236 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
570.000 570.000 570.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.65 Å
ligand BGC, GAL, SIA enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCrystal structures of murine polyomavirus in complex with straight-chain and branched-chain sialyloligosaccharide receptor fragments., Stehle T, Harrison SC, Structure 1996 Feb 15;4(2):183-94. PMID:8805524
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (364 Kb) [Save to disk]
  • Biological Unit Coordinates (1sid.pdb1.gz) 20637 Kb
  • LPC: Ligand-Protein Contacts for 1SID
  • CSU: Contacts of Structural Units for 1SID
  • Likely Quarternary Molecular Structure file(s) for 1SID
  • Retrieve 1SID in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SID from S2C, [Save to disk]
  • View 1SID in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SID
  • VIPERdb: visual, structural and computational analysis of 1SID
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1SID, from MSDmotif at EBI
  • Genome occurence of 1SID's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sida_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1sidb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1sidc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1sidd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1side_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1sidf_, region F [Jmol] [rasmolscript] [script source]
  • Fold representative 1sid from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sid_B] [1sid_C] [1sid_E] [1sid_F] [1sid_A] [1sid_D] [1sid]
  • SWISS-PROT database: [P49302]
  • Domain organization of [VP1_POVMP] by SWISSPFAM
  • Other resources with information on 1SID
  • Community annotation for 1SID at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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