1SJ1 Electron Transport date Mar 02, 2004
title The 1.5 A Resolution Crystal Structure Of [Fe3s4]- Ferredoxin From The Hyperthermophilic Archaeon Pyrococcus Furiosus
authors M.S.Nielsen, P.Harris, B.L.Ooi, H.E.Christensen
compound source
Molecule: Ferredoxin
Chain: A, B
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
Gene: Fdxa, Pf1909
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
symmetry Space Group: P 1 21 1
R_factor 0.194 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.230 47.511 52.029 90.00 103.86 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand F3S, NCO enzyme
note 1SJ1 is a representative structure
related structures by homologous chain: 1SIZ
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • electron transfer activity


  • Primary referenceThe 1.5 A resolution crystal structure of [Fe3S4]-ferredoxin from the hyperthermophilic archaeon Pyrococcus furiosus., Nielsen MS, Harris P, Ooi BL, Christensen HE, Biochemistry 2004 May 11;43(18):5188-94. PMID:15122884
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (1sj1.pdb1.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 1SJ1
  • CSU: Contacts of Structural Units for 1SJ1
  • Likely Quarternary Molecular Structure file(s) for 1SJ1
  • Structure Factors (317 Kb)
  • Retrieve 1SJ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SJ1 from S2C, [Save to disk]
  • Re-refined 1sj1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SJ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SJ1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1SJ1 1SJ1A 1SJ1B from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1SJ1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sj1a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1sj1b_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1sj1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sj1_A] [1sj1_B] [1sj1]
  • SWISS-PROT database: [P29603]
  • Domain organization of [FER_PYRFU] by SWISSPFAM
  • Other resources with information on 1SJ1
  • Community annotation for 1SJ1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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