1SJ5 Unknown Function date Mar 02, 2004
title Crystal Structure Of A Duf151 Family Protein (Tm0160) From T Maritima At 2.8 A Resolution
authors G.Spraggon, D.Panatazatos, H.E.Klock, I.A.Wilson, V.L.Woods Jr., S.A.Lesley, Joint Center For Structural Genomics (Jcsg)
compound source
Molecule: Conserved Hypothetical Protein Tm0160
Chain: A, B
Engineered: Yes
Mutation: Yes
Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336
Gene: Tm0160
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.216 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.001 52.136 73.330 90.00 97.64 90.00
method X-Ray Diffractionresolution 2.80 Å
related structures by homologous chain: 1VJL
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceOn the use of DXMS to produce more crystallizable proteins: structures of the T. maritima proteins TM0160 and TM1171., Spraggon G, Pantazatos D, Klock HE, Wilson IA, Woods VL Jr, Lesley SA, Protein Sci 2004 Dec;13(12):3187-99. PMID:15557262
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (1sj5.pdb1.gz) 43 Kb
  • CSU: Contacts of Structural Units for 1SJ5
  • Likely Quarternary Molecular Structure file(s) for 1SJ5
  • Structure Factors (58 Kb)
  • Retrieve 1SJ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SJ5 from S2C, [Save to disk]
  • Re-refined 1sj5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SJ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SJ5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SJ5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sj5_A] [1sj5_B] [1sj5]
  • SWISS-PROT database: [Q9WY07]
  • Domain organization of [Q9WY07_THEMA] by SWISSPFAM
  • Other resources with information on 1SJ5
  • Community annotation for 1SJ5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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