1SJR Rna Binding Protein date Mar 04, 2004
title Nmr Structure Of Rrm2 From Human Polypyrimidine Tract Binding Protein Isoform 1 (Ptb1)
authors P.J.Simpson, T.P.Monie, A.Szendroi, N.Davydova, J.K.Tyzack, M.R.Conte, C.M.Read, P.D.Cary, D.I.Svergun, P.V.Konarev, M.V.Petoukhov, S.Curry, S.J.Matthews
compound source
Molecule: Polypyrimidine Tract-Binding Protein 1
Chain: A
Synonym: Ptb, Heterogeneous Nuclear Ribonucleoprotein I, Hnrnp I, 57 Kda Rna-Binding Protein Pptb-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptbp1, Ptb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Sg13009 (Qiagen)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe9
methodSolution NMR

Primary referenceStructure and RNA Interactions of the N-Terminal RRM Domains of PTB., Simpson PJ, Monie TP, Szendroi A, Davydova N, Tyzack JK, Conte MR, Read CM, Cary PD, Svergun DI, Konarev PV, Curry S, Matthews S, Structure (Camb) 2004 Sep;12(9):1631-43. PMID:15341728
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (469 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1SJR
  • Original NMR restraints for 1SJR from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1SJR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SJR from S2C, [Save to disk]
  • View 1SJR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SJR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1SJR, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sjra_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1sjr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sjr_A] [1sjr]
  • SWISS-PROT database: [P26599]
  • Domain organization of [PTBP1_HUMAN] by SWISSPFAM
  • Domain found in 1SJR: [RRM ] by SMART
  • Other resources with information on 1SJR
  • Community annotation for 1SJR at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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