1SJV	Antibiotic	date	Mar 04, 2004
title	Three-Dimensional Structure Of A Llama Vhh Domain Swapping
authors	S.Spinelli, A.Desmyter, L.Frenken, T.Verrips, C.Cambillau
compound		source
Molecule: R9 Chain: A Engineered: Yes Other_details: Llama Vhh Single Domain Antibody		Organism_scientific: Lama Glama Organism_common: Llama Organism_taxid: 9844 Expression_system: Saccharomyces Cerevisiae Expression_system_common: Baker'S Yeast Expression_system_taxid: 4932 Expression_system_strain: Vwk18 Expression_system_vector_type: Plasmid
symmetry	Space Group: I 41 3 2	R_factor 0.206 R_Free 0.225
crystal cell	length a length b length c angle alpha angle beta angle gamma 124.300 124.300 124.300 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.94 Å
related structures	by homologous chain: 1SHM
Primary reference	Domain swapping of a llama VHH domain builds a crystal-wide beta-sheet structure., Spinelli S, Desmyter A, Frenken L, Verrips T, Tegoni M, Cambillau C, FEBS Lett 2004 Apr 23;564(1-2):35-40. PMID:15094039

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk] Biological Unit Coordinates (1sjv.pdb1.gz) 18 Kb Biological Unit Coordinates (1sjv.pdb2.gz) 35 Kb CSU: Contacts of Structural Units for 1SJV Likely Quarternary Molecular Structure file(s) for 1SJV Structure Factors (97 Kb) Retrieve 1SJV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1SJV from S2C, [Save to disk] Re-refined 1sjv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1SJV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1SJV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1SJV, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1sjva_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1sjv] [1sjv_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 1SJV: [IGv ] by SMART

Other resources with information on 1SJV

Community annotation for 1SJV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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