OCA Atlas for 1SLJ

1SLJ

Hydrolase

date

Mar 05, 2004

title

Solution Structure Of The S1 Domain Of Rnase E From E. Coli

authors

M.Schubert, R.E.Edge, P.Lario, M.A.Cook, N.C.J.Strynadka, G.A.Mac L.P.Mcintosh

compound

source

Molecule: Ribonuclease E
Chain: A
Fragment: S1 Domain
Synonym: Rnase E
Ec: 3.1.4.-
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rne, Ams, Hmp1, B1084
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

method

Solution NMR

ligand

enzyme

Hydrolase E.C.3.1.4 BRENDA

related structures

by homologous chain: 1SN8

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Structural characterization of the RNase E S1 domain and identification of its oligonucleotide-binding and dimerization interfaces., Schubert M, Edge RE, Lario P, Cook MA, Strynadka NC, Mackie GA, McIntosh LP, J Mol Biol. 2004 Jul 30;341(1):37-54. PMID:15312761

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (287 Kb) [Save to disk]

Biological Unit Coordinates (1slj.pdb1.gz) 28 Kb

CSU: Contacts of Structural Units for 1SLJ

Original NMR restraints for 1SLJ from PDB

Experimental data, such as chemical shifts, at BioMagResBank (BMRB)

NMR Restraints Grid from BioMagResBank (BMRB)

Retrieve 1SLJ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1SLJ from S2C, [Save to disk]

View 1SLJ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1SLJ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1SLJ, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1slja_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1slj] [1slj_A]

SWISS-PROT database: [P21513]

Domain organization of [RNE_ECOLI] by SWISSPFAM

Domain found in 1SLJ: [S1 ] by SMART

Other resources with information on 1SLJ

Community annotation for 1SLJ at PDBWiki (http://pdbwiki.org)

NMR Ensemble (OLDERADO: core, domain and representative structure database)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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