1SLO Rna date May 24, 1996
title First Stem Loop Of The Sl1 Rna From Caenorhabditis Elegans, Minimized Average Structure
authors N.L.Greenbaum, I.Radhakrishnan, D.J.Patel, D.Hirsh
compound source
Molecule: Rna (5'- R(Upupapcpcpcpapapgpupupupgpapgpgpupapa)
Chain: A
Fragment: 19 Residue Modified Fragment From The First Stem The Sl1 Rna From Caenorhabditis Elegans;
Synonym: Sl1 Rna
Engineered: Yes
 Organism_scientific: Caenorhabditis Elegans
Organism_taxid: 6239
Expression_system: In Vitro T7 Polymerase Transcription
methodSolution NMR
Primary referenceSolution structure of the donor site of a trans-splicing RNA., Greenbaum NL, Radhakrishnan I, Patel DJ, Hirsh D, Structure 1996 Jun 15;4(6):725-33. PMID:8805553
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (1slo.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 1SLO
  • Original NMR restraints for 1SLO from PDB
  • Retrieve 1SLO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SLO from S2C, [Save to disk]
    • View 1SLO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1SLO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SLO, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1slo] [1slo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1SLO
  • Community annotation for 1SLO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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