1SMB Unknown Function date Mar 08, 2004
title Crystal Structure Of Golgi-Associated Pr-1 Protein
authors R.L.Serrano, A.Kuhn, A.Hendricks, J.B.Helms, I.Sinning, M.R.Groves
compound source
Molecule: 17kd Fetal Brain Protein
Chain: A
Synonym: Gapr-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cac12812
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 [De3]
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe60
symmetry Space Group: P 31 2 1
R_factor 0.188 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.662 73.662 63.363 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.55 Å
ligand OCS enzyme
note 1SMB is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural analysis of the human Golgi-associated plant pathogenesis related protein GAPR-1 implicates dimerization as a regulatory mechanism., Serrano RL, Kuhn A, Hendricks A, Helms JB, Sinning I, Groves MR, J Mol Biol 2004 May 21;339(1):173-83. PMID:15123429
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (1smb.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 1SMB
  • CSU: Contacts of Structural Units for 1SMB
  • Likely Quarternary Molecular Structure file(s) for 1SMB
  • Structure Factors (223 Kb)
  • Retrieve 1SMB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SMB from S2C, [Save to disk]
  • Re-refined 1smb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SMB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SMB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SMB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1smba_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1smb_A] [1smb]
  • SWISS-PROT database: [Q9H4G4]
  • Domain organization of [GAPR1_HUMAN] by SWISSPFAM
  • Domain found in 1SMB: [SCP ] by SMART
  • Other resources with information on 1SMB
  • Community annotation for 1SMB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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