1SMN Endonuclease date Jan 25, 1995
title Identification Of The Serratia Endonuclease Dimer: Structura And Implications For Catalysis
authors M.D.Miller, K.L.Krause
compound source
Molecule: Extracellular Endonuclease
Chain: A, B
Ec: 3.1.30.2
Engineered: Yes
Organism_scientific: Serratia Marcescens
Organism_taxid: 615
Strain: Sm6
Gene: Nuca
Expression_system: Serratia Marcescens
Expression_system_taxid: 615
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Puc19nuc4oc
Expression_system_gene: Nuca
symmetry Space Group: P 21 21 2
R_factor 0.168 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.700 74.500 68.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.04 Å
ligand
enzyme Hydrolase E.C.3.1.30.2 BRENDA
related structures by homologous chain: 1QAE
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • nuclease activity
  • endonuclease activity


  • Primary referenceIdentification of the Serratia endonuclease dimer: structural basis and implications for catalysis., Miller MD, Krause KL, Protein Sci 1996 Jan;5(1):24-33. PMID:8771193
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (1smn.pdb1.gz) 79 Kb
  • CSU: Contacts of Structural Units for 1SMN
  • Likely Quarternary Molecular Structure file(s) for 1SMN
  • Retrieve 1SMN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SMN from S2C, [Save to disk]
  • View 1SMN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SMN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SMN, from MSDmotif at EBI
  • Genome occurence of 1SMN's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1smna_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1smnb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1smn] [1smn_B] [1smn_A]
  • SWISS-PROT database: [P13717]
  • Domain organization of [NUCA_SERMA] by SWISSPFAM
  • Domains found in 1SMN: [Endonuclease_NS] [NUC ] by SMART
  • Other resources with information on 1SMN
  • Community annotation for 1SMN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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