1SP1 Zinc Finger date Nov 21, 1996
title Nmr Structure Of A Zinc Finger Domain From Transcription Factor Sp1f3, Minimized Average Structure
authors V.A.Narayan, R.W.Kriwacki, J.P.Caradonna
compound source
Molecule: Sp1f3
Chain: A
Fragment: Zinc Finger Dna Binding Domain
Synonym: Transcription Factor Sp1
Engineered: Yes
Other_details: Does Not Bind Dna Specifically As A Single Zinc Finger
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cellular_location: Nucleoplasm
methodSolution NMR
ligand ZN enzyme

Primary referenceStructures of zinc finger domains from transcription factor Sp1. Insights into sequence-specific protein-DNA recognition., Narayan VA, Kriwacki RW, Caradonna JP, J Biol Chem 1997 Mar 21;272(12):7801-9. PMID:9065444
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1SP1
  • CSU: Contacts of Structural Units for 1SP1
  • Original NMR restraints for 1SP1 from PDB
  • Retrieve 1SP1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SP1 from S2C, [Save to disk]
  • View 1SP1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SP1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1SP1, from MSDmotif at EBI
  • Genome occurence of 1SP1's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sp1__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1sp1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sp1] [1sp1_A]
  • SWISS-PROT database: [P08047]
  • Domain organization of [SP1_HUMAN] by SWISSPFAM
  • Domain found in 1SP1: [ZnF_C2H2 ] by SMART
  • Other resources with information on 1SP1
  • Community annotation for 1SP1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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