1SSL Structural Protein date Mar 24, 2004
title Solution Structure Of The Psi Domain From The Met Receptor
authors G.Kozlov, A.Perreault, J.D.Schrag, M.Cygler, K.Gehring, I.Ekiel
compound source
Molecule: Hepatocyte Growth Factor Receptor
Chain: A
Fragment: Psi Domain (Residues 519-562)
Synonym: Met Proto-Oncogene Tyrosine Kinase, C-Met, Hgf Receptor, Hgf-Sf Receptor;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Origami (Novagen)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a
methodSolution NMR
note 1SSL is a representative structure
Primary referenceInsights into function of PSI domains from structure of the Met receptor PSI domain., Kozlov G, Perreault A, Schrag JD, Park M, Cygler M, Gehring K, Ekiel I, Biochem Biophys Res Commun 2004 Aug 13;321(1):234-40. PMID:15358240
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (262 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1SSL
  • Original NMR restraints for 1SSL from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1SSL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SSL from S2C, [Save to disk]
  • View 1SSL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SSL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1SSL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ssla_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1ssl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ssl] [1ssl_A]
  • SWISS-PROT database: [P08581]
  • Domain organization of [MET_HUMAN] by SWISSPFAM
  • Domain found in 1SSL: [PSI ] by SMART
  • Other resources with information on 1SSL
  • Community annotation for 1SSL at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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