1SSU Cell Adhesion date Mar 24, 2004
title Structural And Biochemical Evidence For Disulfide Bond Heter In Active Forms Of The Somatomedin B Domain Of Human Vitron
authors Y.Kamikubo, R.De Guzman, G.Kroon, S.Curriden, J.G.Neels, M.J.Chur P.Dawson, S.Oldziej, A.Jagielska, H.A.Scheraga, D.J.Loskutoff, H
compound source
Molecule: Vitronectin
Chain: A
Fragment: Somatomedin B Domain Of Human Vitronectin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vtn
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21trxb(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-32a
methodSolution NMR
related structures by homologous chain: 1S4G
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDisulfide bonding arrangements in active forms of the somatomedin B domain of human vitronectin., Kamikubo Y, De Guzman R, Kroon G, Curriden S, Neels JG, Churchill MJ, Dawson P, Oldziej S, Jagielska A, Scheraga HA, Loskutoff DJ, Dyson HJ, Biochemistry 2004 Jun 1;43(21):6519-34. PMID:15157085
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (256 Kb) [Save to disk]
  • Biological Unit Coordinates (1ssu.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 1SSU
  • Original NMR restraints for 1SSU from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1SSU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SSU from S2C, [Save to disk]
  • View 1SSU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SSU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SSU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ssua_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ssu_A] [1ssu]
  • SWISS-PROT database: [P04004]
  • Domain organization of [VTNC_HUMAN] by SWISSPFAM
  • Domain found in 1SSU: [SO ] by SMART
  • Other resources with information on 1SSU
  • Community annotation for 1SSU at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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