1SVD Lyase date Mar 29, 2004
title The Structure Of Halothiobacillus Neapolitanus Rubisco
authors C.A.Kerfeld, M.R.Sawaya, I.Pashkov, G.Cannon, E.Williams, K.Tran, T.O.Yeates
compound source
Molecule: Ribulose-1,5-Bisphosphate Carboxylaseoxygenase L Subunit;
Chain: A
Ec: 4.1.1.39
Organism_scientific: Halothiobacillus Neapolitanus
Organism_taxid: 927

Molecule: Ribulose Bisphosphate Carboxylase Small Chain
Chain: M
Synonym: Rubisco Small Subunit
Ec: 4.1.1.39

Organism_scientific: Halothiobacillus Neapolitanus
Organism_taxid: 927
symmetry Space Group: I 4 2 2
R_factor 0.145 R_Free 0.166
crystal
cell
length a length b length c angle alpha angle beta angle gamma
157.066 157.066 107.609 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand GOL, SO4 enzyme Lyase E.C.4.1.1.39 BRENDA
related structures by homologous chain: 1IR1, 8RUC
Gene
Ontology
ChainFunctionProcessComponent
A


M


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (1svd.pdb1.gz) 96 Kb
  • Biological Unit Coordinates (1svd.pdb2.gz) 751 Kb
  • Biological Unit Coordinates (1svd.pdb3.gz) 190 Kb
  • Biological Unit Coordinates (1svd.pdb4.gz) 190 Kb
  • LPC: Ligand-Protein Contacts for 1SVD
  • CSU: Contacts of Structural Units for 1SVD
  • Likely Quarternary Molecular Structure file(s) for 1SVD
  • Structure Factors (490 Kb)
  • Retrieve 1SVD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SVD from S2C, [Save to disk]
  • Re-refined 1svd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SVD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SVD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1SVD, from MSDmotif at EBI
  • Fold representative 1svd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1svd] [1svd_M] [1svd_A]
  • SWISS-PROT database: [O85040] [P45686]
  • Domain organization of [RBL1_HALNC] [RBS_HALNC] by SWISSPFAM
  • Domain found in 1SVD: [RuBisCO_small ] by SMART
  • Other resources with information on 1SVD
  • Community annotation for 1SVD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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