1SYE Hydrolase(Phosphoric Diester) date Jan 07, 1994
title Engineering Alternative Beta-Turn Types In Staphylococcal Nu
authors T.R.Hynes, A.Hodel, R.O.Fox
compound source
Molecule: Staphylococcal Nuclease
Chain: A
Ec: 3.1.31.1
Engineered: Yes
 Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
symmetry Space Group: P 41
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.500 48.500 63.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand
enzyme Hydrolase E.C.3.1.31.1 BRENDA
related structures by homologous chain: 1SYC, 1SYF
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEngineering alternative beta-turn types in staphylococcal nuclease., Hynes TR, Hodel A, Fox RO, Biochemistry 1994 May 3;33(17):5021-30. PMID:8172877
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (1sye.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 1SYE
  • Likely Quarternary Molecular Structure file(s) for 1SYE
  • Retrieve 1SYE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SYE from S2C, [Save to disk]
    • View 1SYE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1SYE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SYE, from MSDmotif at EBI
  • Genome occurence of 1SYE's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sye__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sye] [1sye_A]
  • SWISS-PROT database: [P00644]
  • Domain organization of [NUC_STAAU] by SWISSPFAM
  • Domain found in 1SYE: [SNc ] by SMART
    • Other resources with information on 1SYE
  • Community annotation for 1SYE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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