1SZT ATOMIC STRUCTURE OF A THERMOSTABLE SUBDOMAIN OF HIV-1 GP41 date
authors Tan, K., Lu, M., Wang, J.H.
compound source
symmetry
R_factor
R_Free 0.2690000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
related structures by homologous chain: 1F23
Primary referenceAtomic structure of a thermostable subdomain of HIV-1 gp41., Tan K, Liu J, Wang J, Shen S, Lu M, Proc Natl Acad Sci U S A 1997 Nov 11;94(23):12303-8. PMID:9356444
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (1szt.pdb1.gz) 37 Kb
  • CSU: Contacts of Structural Units for 1SZT
  • Likely Quarternary Molecular Structure file(s) for 1SZT
  • Structure Factors (19 Kb)
  • Retrieve 1SZT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SZT from S2C, [Save to disk]
  • Re-refined 1szt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SZT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SZT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1SZT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1szt__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1szt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1szt] [1szt_A]
  • SWISS-PROT database: [P04582]
  • Domain organization of [ENV_HV1B8] by SWISSPFAM
  • Other resources with information on 1SZT
  • Community annotation for 1SZT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1SZT from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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