1T01	Cell Adhesion, Structural Protein	date	Apr 07, 2004
title	Vinculin Complexed With The Vbs1 Helix From Talin
authors	E.Papagrigoriou, A.R.Gingras, I.L.Barsukov, D.R.Critchley, J.Ems
compound		source
Molecule: Unnamed Protein Product Chain: A Fragment: Vinculin Head Engineered: Yes		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031 Gene: Vcl Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Talin 1 Chain: B Fragment: Talin (Vinculin Binding Site 1) Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Tln1, Tln Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 21 21 2	R_factor 0.230 R_Free 0.303
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.645 71.421 96.093 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.06 Å
related structures	by homologous chain: 1RKE
Gene Ontology	Chain Function Process Component A
Primary reference	Activation of a vinculin-binding site in the talin rod involves rearrangement of a five-helix bundle., Papagrigoriou E, Gingras AR, Barsukov IL, Bate N, Fillingham IJ, Patel B, Frank R, Ziegler WH, Roberts GC, Critchley DR, Emsley J, EMBO J 2004 Aug 4;23(15):2942-2951. Epub 2004 Jul 22. PMID:15272303

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk] Biological Unit Coordinates (1t01.pdb1.gz) 49 Kb CSU: Contacts of Structural Units for 1T01 Likely Quarternary Molecular Structure file(s) for 1T01 Structure Factors (191 Kb) Retrieve 1T01 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1T01 from S2C, [Save to disk] Re-refined 1t01 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1T01 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1T01

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1T01, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1t01a1, region A:1-125 [Jmol] [rasmolscript] [script source]     - Domain d1t01a2, region A:126-252 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1t01_B] [1t01] [1t01_A] SWISS-PROT database: [P26039] [P12003] Domain organization of [TLN1_MOUSE] [VINC_CHICK] by SWISSPFAM

Other resources with information on 1T01

Community annotation for 1T01 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---